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I've hoped futiley that questions on punctuation with quotations wouldn't come up. Chicago's index has two and a half columns on quotations and covers several areas related to whether a period should go inside or outside quote marks. Wikipedia's style manual and other emerging manuals of style for online publication cover another range. Science and academic style manuals like MLA cover another range.
U.S. English typological usage for dialogue in prose and journalism, known as typesetter's quotes, periods always go inside with one optional exception, unless not a part of cited or quoted text.
British English usage according to Hart's Rules or Oxford Guide to Style, periods always go outside and with single quote marks.
Online logical quotes according to Wikipedia online style manual, periods always go outside for cited text or quoted dialogue, unless the period is an internal part of the original text or quote. Always inside when quote marks are used to indicate emphasis. Emphasis is treated differently in other styles.
[This message has been edited by extrinsic (edited August 11, 2009).]